For best results, use painter's tape to cover any areas you don't want inked. It's also best to use the tape to seal all of the edges of the stencil onto your project so that it doesn't move when stencilling. This is particularly important when your stencil has lots of small detail. If the tape is difficult to pull up, use a hair dryer on a low setting or a heat tool to heat the tape and release the seal. 
 
Sponge daubers have the best results for stencilling.
 
Use a tray similar to a deep baking tray with soapy water in it to place your stencil in when you're finished with it if you're going to use more stencils. This enables you to clean almost all of the paint off. A kitchen scourer is great for cleaning stencils flat in some kind of tray. Work gently with stencils that have intricate pieces to them.